List
The ones that did something noteworthy on the technical side
Check the game source sections for links to source code for some of these.
Underworld Engine - 1992
Ultima Underworld, Ultima Underworld II and System Shock.
Id Tech 1 - 1993
Doom, Heretic and Hexen.
Doom engine code review - 2010
Doom Iphone code review - 2010
Descent - 1995
Descent & Descent II
Build Engine - 1995
Duke Nukem 3D, Shadow Warrior and Blood.
Duke Nukem 3D Code Review - 2013
XnGine - 1995
The Terminator: Future Shock, Terminator: SkyNET and TES 2: Daggerfall.
Id Tech 2 - 1997
Quake, Quake 2
Quake Engine code review - 2009
Quake 2 Source Code Review - 2011
Sith engine - 1997
Jedi Knight and Jedi Knight: Mysteries of the Sith
Dark Engine - 1998
Thief: The Dark Project, Thief II: The Metal Age System Shock 2
The 3D Software Rendering Technology of 1998's Thief: The Dark Project - 2011
Unreal Engine 1 - 1998
Unreal, Unreal Tournament, Deus Ex and Rune.
Id Tech 3 - 1999
Quake 3 Arena
The Quake 3 Rendering Engine - 1999
Quake 3 Source Code Review - 2012
Unreal Engine 2 - 2003
Unreal II, Unreal Tournament 2004, BioShock and Thief: Deadly Shadows
Id Tech 4 - 2004
Doom III
Doom3 Source Code Review - 2012
Doom3 BFG Source Code Review - 2013
Doom3 BFG Documentation - 2013
Cry Engine 1 - 2004
Far Cry
Source engine - 2004
Unreal Engine 3 - 2006
Gears of War, Mass Effect and. Unreal Tournament 3
Cry Engine 2 - 2007
Crysis
Id Tech 5 - 2011
Rage
Cry Engine 3 - 2011
Crysis 2, Crysis 3 and Sniper: Ghost Warrior 2
Others
Jurassic Park: Trespasser CG Source Code Review - 2014
Prince Of Persia Code Review - 2013
"Another World" Code Review - 2011
Wolfenstein 3D for iPhone - 2009
The G3D Innovation Engine
http://casual-effects.com/g3d/
https://github.com/openxray/xray-16
Lumix Engine
https://github.com/nem0/lumixengine
Tombstone Engine API Documentation
http://tombstoneengine.com/docs/
WickedEngine
https://github.com/turanszkij/WickedEngine